Peptide Database

Peptide NameCRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA

Function Ontology

Antiviral

Standard StatusStandard

Sequence Length199 amino acids

Chemical FormulaC1027H1152N292O94S11

DescriptionPDB structure; X-ray @1.856Å

        GPLGSEILRHSMDPATFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLAQRRGFLANQAKHKHGFLEGRHAALCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDDKGRAAEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDLSGRLRAILQNQEN
    

Molecular Weight23027.79 Da

Isoelectric Point (pI)6.84

Net Charge (pH 7.0)-0.51

Net Charge (pH 7.4) -1.63

Charge Density (pH 7.0) -0.0025

GRAVY Index-0.52

Hydrophobic Moment 0.09

Boman Index-0.06

Instability Index36.85

Aliphatic Index 67.24

Aromaticity 0.1709

Extinction Coeff. Reduced 40450.00

Extinction Coeff. Oxidized 40825.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 7844.86

LogP 30.43

H-bond Donors 154.0

H-bond Acceptors 313.0

Rotatable Bonds 396.0

Heavy Atoms 1443.0

Ring Count 47.0

Amide Bonds 395.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0431353 VERIFIED: YES

Provenance & Taxonomy

OrganismHomo sapiens [other]

Tax ID9606

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

N-TermNone

C-TermNone

Bio-Activity Profile

Function

Antiviral

MethodX-ray