Peptide Database

Peptide NameCrystal structure of APOBEC3F-CD1

Function Ontology

Antiviral

Standard StatusStandard

Sequence Length197 amino acids

Chemical FormulaC1048H1159N285O94S13

DescriptionPDB structure; X-ray @2.599Å

        GPGGSGGMKPHFRNTVERMDRDTFSYNFYNEPILARRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLPADKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYSERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVDSEGQPFMPWYKFDDNYAFLHRTLKEILRN
    

Molecular Weight23217.12 Da

Isoelectric Point (pI)7.41

Net Charge (pH 7.0)0.97

Net Charge (pH 7.4) 0.03

Charge Density (pH 7.0) 0.0049

GRAVY Index-0.53

Hydrophobic Moment 0.10

Boman Index-0.06

Instability Index32.69

Aliphatic Index 59.95

Aromaticity 0.1827

Extinction Coeff. Reduced 49390.00

Extinction Coeff. Oxidized 49890.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 7734.36

LogP 36.58

H-bond Donors 156.0

H-bond Acceptors 310.0

Rotatable Bonds 391.0

Heavy Atoms 1462.0

Ring Count 54.0

Amide Bonds 386.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0431347 VERIFIED: YES

Provenance & Taxonomy

OrganismHomo sapiens [other]

Tax ID9606

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

N-TermNone

C-TermNone

Bio-Activity Profile

Function

Antiviral

MethodX-ray