Peptide Database

Peptide NameExtended structure of citidine deaminase domain of APOBEC3G

Function Ontology

Antiviral

Standard StatusStandard

Sequence Length202 amino acids

Chemical FormulaC1048H1164N296O99S11

DescriptionPDB structure; NMR

        GPLGSPGFEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVKLNQRRGFLANQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDDQGRAQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGAPFQPWDGLDEHSQDLSGRLRAILQNQEN
    

Molecular Weight23482.18 Da

Isoelectric Point (pI)6.20

Net Charge (pH 7.0)-3.50

Net Charge (pH 7.4) -4.62

Charge Density (pH 7.0) -0.0174

GRAVY Index-0.59

Hydrophobic Moment 0.08

Boman Index-0.06

Instability Index40.04

Aliphatic Index 64.26

Aromaticity 0.1733

Extinction Coeff. Reduced 40450.00

Extinction Coeff. Oxidized 40825.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 8029.11

LogP 26.45

H-bond Donors 157.0

H-bond Acceptors 318.0

Rotatable Bonds 406.0

Heavy Atoms 1477.0

Ring Count 51.0

Amide Bonds 400.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0431337 VERIFIED: YES

Provenance & Taxonomy

OrganismHomo sapiens [other]

Tax ID9606

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

N-TermNone

C-TermNone

Bio-Activity Profile

Function

Antiviral

MethodNMR