Peptide Database

Peptide NameCrystal structure of a Fab fragment with the ligand peptide

Function Ontology

Toxin

Standard StatusStandard

Sequence Length242 amino acids

Chemical FormulaC1157H1329N301O106S15

DescriptionPDB structure; X-ray @2.05Å

        MLVLQWVLVTALFQGVHCAVQLVESGGGLVQPKESLKISCAAFGVTFSNVAMYWVRQAPGKGLEWVARIRTKPNNYATYYADSVKGRFTISRDDSKSMVYLQMDNLKTEDTAMYYCTAEVATDWGQGVMVTVSSAETTAPSVYPLAPGTALKSNSMVTLGCLVKGYFPEPVTVTWNSGALSSGVHTFPAVLQSGLYTLTSSVTVPSSTWSSQAVTCNVAHPASSTKVDKKIIVPRECNPCGC
    

Molecular Weight25988.55 Da

Isoelectric Point (pI)7.94

Net Charge (pH 7.0)2.78

Net Charge (pH 7.4) 1.95

Charge Density (pH 7.0) 0.0115

GRAVY Index0.11

Hydrophobic Moment 0.07

Boman Index0.15

Instability Index36.43

Aliphatic Index 81.69

Aromaticity 0.1033

Extinction Coeff. Reduced 47900.00

Extinction Coeff. Oxidized 48400.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 8437.25

LogP 3.80

H-bond Donors 156.0

H-bond Acceptors 369.0

Rotatable Bonds 404.0

Heavy Atoms 1610.0

Ring Count 44.0

Amide Bonds 469.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0431269 VERIFIED: YES

Provenance & Taxonomy

OrganismRattus [other]

Tax ID10114

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

N-TermNone

C-TermNone

Bio-Activity Profile

Function

Toxin

MethodX-ray