Peptide Database

Peptide NameParigidin-br1

Function Ontology

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Standard StatusStandard

Sequence Length32 amino acids

Chemical FormulaC140H212N36O46S6

DescriptionStandard

        GGDIPCGESCVYIPCITGVLGCSCSHNVCYYN
    

Molecular Weight3327.78 Da

Isoelectric Point (pI)4.35

Net Charge (pH 7.0)-2.21

Net Charge (pH 7.4) -2.56

Charge Density (pH 7.0) -0.0691

GRAVY Index0.48

Hydrophobic Moment 0.23

Boman Index0.29

Instability Index34.96

Aliphatic Index 75.94

Aromaticity 0.0938

Extinction Coeff. Reduced 4470.00

Extinction Coeff. Oxidized 4845.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1278.91

LogP -15.41

H-bond Donors 49.0

H-bond Acceptors 51.0

Rotatable Bonds 99.0

Heavy Atoms 228.0

Ring Count 6.0

Amide Bonds 33.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0362340 VERIFIED: YES

Provenance & Taxonomy

OrganismViola tricolor [Plant]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)