Peptide Database

Peptide NamepdBD-2

Function Ontology

—

Standard StatusStandard

Sequence Length42 amino acids

Chemical FormulaC215H327N67O56S7

DescriptionStandard

        DTKVQGWTCGYRGACRKYCYAQEYMVGYHGCPRRLRCCALRF
    

Molecular Weight4970.77 Da

Isoelectric Point (pI)9.27

Net Charge (pH 7.0)5.78

Net Charge (pH 7.4) 5.43

Charge Density (pH 7.0) 0.1377

GRAVY Index-0.55

Hydrophobic Moment 0.59

Boman Index-0.18

Instability Index46.60

Aliphatic Index 39.52

Aromaticity 0.1667

Extinction Coeff. Reduced 12950.00

Extinction Coeff. Oxidized 13325.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2017.93

LogP -19.12

H-bond Donors 81.0

H-bond Acceptors 70.0

Rotatable Bonds 158.0

Heavy Atoms 345.0

Ring Count 10.0

Amide Bonds 43.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0403436 VERIFIED: YES

Provenance & Taxonomy

OrganismOncorhynchus mykiss [Animal]

Structure & Mods

ConfigDNA-encoded linear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)