Peptide Database

Peptide NamePodacycline A

Function Ontology

Immunology ▸ Immune modulation ▸ Immunomodulatory activity

Standard StatusStandard

Sequence Length9 amino acids

Chemical FormulaC40H62N10O10

DescriptionStandard

        GLLGAVWAG
    

Molecular Weight842.98 Da

Isoelectric Point (pI)5.53

Net Charge (pH 7.0)-0.24

Net Charge (pH 7.4) -0.44

Charge Density (pH 7.0) -0.0267

GRAVY Index1.48

Hydrophobic Moment 0.12

Boman Index0.74

Instability Index-17.24

Aliphatic Index 141.11

Aromaticity 0.1111

Extinction Coeff. Reduced 5500.00

Extinction Coeff. Oxidized 5500.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 311.91

LogP -1.32

H-bond Donors 11.0

H-bond Acceptors 10.0

Rotatable Bonds 24.0

Heavy Atoms 60.0

Ring Count 2.0

Amide Bonds 8.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0224796 VERIFIED: YES

Provenance & Taxonomy

OrganismJatropha Podagrica [Plant]

FamilyCyclic Peptide, Orbitide

Structure & Mods

Confighead-to-tail cyclic peptide [Cyclic]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

Immunomodulatory

RECORD: Rec_0403974 VERIFIED: NO

Provenance & Taxonomy

OrganismJatropha podagrica [Plant]

Structure & Mods

Configcyclic peptide [Cyclic]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-