Peptide Database

Peptide NamePeptide chain C in PDB 5AFU

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length31 amino acids

Chemical FormulaC132H206N36O43S

DescriptionStandard

        MADPKYADLPGIARNEPDVYAAAAAAAAAAA
    

Molecular Weight3017.33 Da

Isoelectric Point (pI)4.23

Net Charge (pH 7.0)-2.50

Net Charge (pH 7.4) -2.72

Charge Density (pH 7.0) -0.0805

GRAVY Index0.19

Hydrophobic Moment 0.47

Boman Index0.19

Instability Index32.26

Aliphatic Index 79.68

Aromaticity 0.0645

Extinction Coeff. Reduced 2980.00

Extinction Coeff. Oxidized 2980.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1230.62

LogP -12.67

H-bond Donors 40.0

H-bond Acceptors 42.0

Rotatable Bonds 89.0

Heavy Atoms 212.0

Ring Count 5.0

Amide Bonds 31.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0226988 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 5AFU receptor chain D

MethodProtein-peptide complex structure