Peptide Database

Peptide NamePeptide chain B in PDB 1YM0

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length26 amino acids

Chemical FormulaC120H171N29O39S2

DescriptionStandard

        PPVWYPGGQCGVSQYSDAGDMELPPG
    

Molecular Weight2707.94 Da

Isoelectric Point (pI)4.05

Net Charge (pH 7.0)-3.05

Net Charge (pH 7.4) -3.13

Charge Density (pH 7.0) -0.1172

GRAVY Index-0.55

Hydrophobic Moment 0.32

Boman Index0.17

Instability Index50.35

Aliphatic Index 41.15

Aromaticity 0.1154

Extinction Coeff. Reduced 8480.00

Extinction Coeff. Oxidized 8480.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1036.46

LogP -10.86

H-bond Donors 34.0

H-bond Acceptors 38.0

Rotatable Bonds 76.0

Heavy Atoms 190.0

Ring Count 9.0

Amide Bonds 27.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0341560 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 1YM0 receptor chain A

MethodProtein-peptide complex structure