Peptide Database

Peptide NamePn-AMP1

Function Ontology

—

Standard StatusStandard

Sequence Length41 amino acids

Chemical FormulaC170H258N54O64S8

DescriptionStandard

        EQCGRQANGALCPNNLCCSQYGWCGDTDAYCKDGCQSQCGS
    

Molecular Weight4338.71 Da

Isoelectric Point (pI)4.23

Net Charge (pH 7.0)-2.24

Net Charge (pH 7.4) -2.53

Charge Density (pH 7.0) -0.0547

GRAVY Index-0.68

Hydrophobic Moment 0.50

Boman Index-0.10

Instability Index28.14

Aliphatic Index 26.34

Aromaticity 0.0732

Extinction Coeff. Reduced 8480.00

Extinction Coeff. Oxidized 8980.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1937.54

LogP -30.71

H-bond Donors 72.0

H-bond Acceptors 70.0

Rotatable Bonds 140.0

Heavy Atoms 296.0

Ring Count 5.0

Amide Bonds 48.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0076294 VERIFIED: YES

Provenance & Taxonomy

OrganismCucumis melo [Plant]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)