Peptide Database

Peptide NamePeptide chain C in PDB 3JCA

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length49 amino acids

Chemical FormulaC259H388N64O67S3

DescriptionStandard

        PMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
    

Molecular Weight5566.44 Da

Isoelectric Point (pI)6.57

Net Charge (pH 7.0)-0.05

Net Charge (pH 7.4) -0.13

Charge Density (pH 7.0) -0.0010

GRAVY Index0.01

Hydrophobic Moment 0.66

Boman Index0.16

Instability Index43.72

Aliphatic Index 77.55

Aromaticity 0.1429

Extinction Coeff. Reduced 17990.00

Extinction Coeff. Oxidized 17990.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2038.26

LogP -12.40

H-bond Donors 72.0

H-bond Acceptors 70.0

Rotatable Bonds 168.0

Heavy Atoms 393.0

Ring Count 16.0

Amide Bonds 49.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0240388 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 3JCA receptor chain A

MethodProtein-peptide complex structure