Peptide Database

Peptide NamePmAMP-1

Function Ontology

Antimicrobial

Standard StatusStandard

Sequence Length97 amino acids

Chemical FormulaC477H771N129O162S4

DescriptionStandard

        MDTMIDSLNKDMWAETTAKADGYKEYTINRQHKRIDKTTLGLFLDPEEGDSVTVQINDTLDDKDPLKNICRAEFKLDPTNTKVIGIDLDGDIVERKS
    

Molecular Weight11033.25 Da

Isoelectric Point (pI)4.58

Net Charge (pH 7.0)-7.40

Net Charge (pH 7.4) -7.72

Charge Density (pH 7.0) -0.0763

GRAVY Index-0.76

Hydrophobic Moment 0.75

Boman Index-0.16

Instability Index15.53

Aliphatic Index 80.41

Aromaticity 0.0515

Extinction Coeff. Reduced 8480.00

Extinction Coeff. Oxidized 8480.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 4771.20

LogP -49.34

H-bond Donors 163.0

H-bond Acceptors 160.0

Rotatable Bonds 381.0

Heavy Atoms 772.0

Ring Count 10.0

Amide Bonds 103.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0266122 VERIFIED: YES

Provenance & Taxonomy

OrganismPinctada fucata martensii [Animal]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

Antimicrobial

TargetEscherichia coli