Peptide Database

Peptide NamePeptide chain B in PDB 2C1M

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length46 amino acids

Chemical FormulaC228H378N70O77S3

DescriptionStandard

        MAKRVAEKELTDRNWDEEDEVEEMGTFSVASEEVMKNRAVKKAKRR
    

Molecular Weight5428.06 Da

Isoelectric Point (pI)5.41

Net Charge (pH 7.0)-1.48

Net Charge (pH 7.4) -1.72

Charge Density (pH 7.0) -0.0321

GRAVY Index-1.24

Hydrophobic Moment 0.64

Boman Index-0.41

Instability Index67.73

Aliphatic Index 50.87

Aromaticity 0.0435

Extinction Coeff. Reduced 5500.00

Extinction Coeff. Oxidized 5500.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2468.93

LogP -25.71

H-bond Donors 87.0

H-bond Acceptors 79.0

Rotatable Bonds 196.0

Heavy Atoms 378.0

Ring Count 3.0

Amide Bonds 47.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0020714 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 2C1M receptor chain A

MethodProtein-peptide complex structure