Peptide Database

Peptide NamePn-AMP1

Function Ontology

—

Standard StatusStandard

Sequence Length39 amino acids

Chemical FormulaC152H228N46O57S9

DescriptionStandard

        EQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQC
    

Molecular Weight3900.30 Da

Isoelectric Point (pI)4.05

Net Charge (pH 7.0)-2.25

Net Charge (pH 7.4) -2.56

Charge Density (pH 7.0) -0.0577

GRAVY Index-0.02

Hydrophobic Moment 0.30

Boman Index0.12

Instability Index44.14

Aliphatic Index 25.13

Aromaticity 0.0769

Extinction Coeff. Reduced 6990.00

Extinction Coeff. Oxidized 7490.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1650.87

LogP -28.32

H-bond Donors 64.0

H-bond Acceptors 64.0

Rotatable Bonds 122.0

Heavy Atoms 264.0

Ring Count 5.0

Amide Bonds 44.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0226228 VERIFIED: YES

Provenance & Taxonomy

OrganismOryza sativa [Plant]

Structure & Mods

ConfigDNA-encoded linear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)