Peptide Database

Peptide NameCyclotide vibi-C (Plant defensin)

Function Ontology

Anticancer ▸ Cytotoxic anticancer activity ▸ Cytotoxic

Antimicrobial

Toxicity / Safety ▸ Cytotoxicity ▸ Cytotoxic

Venom / Toxin ▸ General toxin ▸ Cytotoxic

Standard StatusStandard

Sequence Length29 amino acids

Chemical FormulaC125H188N34O40S6

DescriptionStandard

        GLPVCGETCAFGSCYTPGCSCSWPVCTRN
    

Molecular Weight2999.42 Da

Isoelectric Point (pI)5.96

Net Charge (pH 7.0)-0.30

Net Charge (pH 7.4) -0.59

Charge Density (pH 7.0) -0.0103

GRAVY Index0.25

Hydrophobic Moment 0.26

Boman Index0.19

Instability Index62.03

Aliphatic Index 36.90

Aromaticity 0.1034

Extinction Coeff. Reduced 6990.00

Extinction Coeff. Oxidized 7365.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1151.44

LogP -15.99

H-bond Donors 46.0

H-bond Acceptors 46.0

Rotatable Bonds 85.0

Heavy Atoms 205.0

Ring Count 7.0

Amide Bonds 29.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0424488 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Structure & Mods

Configcyclic peptide [Cyclic]

Chiralitycanonical L-amino-acid peptide [L]

N-TermNone

C-TermNone

Bio-Activity Profile

Function

Antimicrobial

FIRST PREV 1 2

Showing 1 records on this page Ã‚Â· Page 2 of 2