Peptide Database

Peptide NamePeptide chain C in PDB 1YVL

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length4 amino acids

Chemical FormulaC21H33N7O7

DescriptionStandard

        DKPH
    

Molecular Weight495.53 Da

Isoelectric Point (pI)6.74

Net Charge (pH 7.0)-0.15

Net Charge (pH 7.4) -0.41

Charge Density (pH 7.0) -0.0382

GRAVY Index-3.05

Hydrophobic Moment 0.38

Boman Index-0.67

Instability Index-32.58

Aliphatic Index 0.00

Aromaticity 0.0000

Extinction Coeff. Reduced 0.00

Extinction Coeff. Oxidized 0.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 233.83

LogP -2.07

H-bond Donors 7.0

H-bond Acceptors 8.0

Rotatable Bonds 14.0

Heavy Atoms 35.0

Ring Count 2.0

Amide Bonds 3.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0270910 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 1YVL receptor chain A

MethodProtein-peptide complex structure