Peptide Database

Peptide NameCyclotide vdif-A

Function Ontology

Antimicrobial

Standard StatusStandard

Sequence Length30 amino acids

Chemical FormulaC132H216N36O40S6

DescriptionStandard

        GIPCGESCVFIPCISSVVGCSCKSKVCYRN
    

Molecular Weight3139.73 Da

Isoelectric Point (pI)8.33

Net Charge (pH 7.0)1.70

Net Charge (pH 7.4) 1.40

Charge Density (pH 7.0) 0.0567

GRAVY Index0.64

Hydrophobic Moment 0.35

Boman Index0.18

Instability Index22.25

Aliphatic Index 77.67

Aromaticity 0.0667

Extinction Coeff. Reduced 1490.00

Extinction Coeff. Oxidized 1865.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1205.35

LogP -14.88

H-bond Donors 48.0

H-bond Acceptors 48.0

Rotatable Bonds 99.0

Heavy Atoms 214.0

Ring Count 4.0

Amide Bonds 30.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0313493 VERIFIED: NO

Provenance & Taxonomy

OrganismViola diffusa [Plant]

FamilyCyclotide

Structure & Mods

Configbackbone-cyclized cyclotide scaffold [Cyclic]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

Antimicrobial