Peptide Database

Peptide NamepdBD-2

Function Ontology

—

Standard StatusStandard

Sequence Length36 amino acids

Chemical FormulaC192H295N65O51S5

DescriptionStandard

        DTDVQRWTCGYRGLCRKHCYAREYMIGYRGCPRRYR
    

Molecular Weight4490.13 Da

Isoelectric Point (pI)9.62

Net Charge (pH 7.0)5.81

Net Charge (pH 7.4) 5.48

Charge Density (pH 7.0) 0.1613

GRAVY Index-1.19

Hydrophobic Moment 0.61

Boman Index-0.43

Instability Index29.61

Aliphatic Index 32.50

Aromaticity 0.1667

Extinction Coeff. Reduced 12950.00

Extinction Coeff. Oxidized 13200.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1935.32

LogP -18.85

H-bond Donors 78.0

H-bond Acceptors 63.0

Rotatable Bonds 144.0

Heavy Atoms 313.0

Ring Count 9.0

Amide Bonds 36.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0338155 VERIFIED: YES

Provenance & Taxonomy

OrganismDanio rerio [Animal]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)