Peptide Database

Peptide NamepdBD-2

Function Ontology

—

Standard StatusStandard

Sequence Length42 amino acids

Chemical FormulaC226H332N68O56S7

DescriptionStandard

        EAGMQYWTCGYRGLCRRFCYAQEYIVGHYGCPRRYRCCVVRF
    

Molecular Weight5121.93 Da

Isoelectric Point (pI)9.10

Net Charge (pH 7.0)4.86

Net Charge (pH 7.4) 4.54

Charge Density (pH 7.0) 0.1157

GRAVY Index-0.35

Hydrophobic Moment 0.62

Boman Index-0.11

Instability Index29.13

Aliphatic Index 44.05

Aromaticity 0.2143

Extinction Coeff. Reduced 14440.00

Extinction Coeff. Oxidized 14815.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2027.79

LogP -16.28

H-bond Donors 82.0

H-bond Acceptors 69.0

Rotatable Bonds 159.0

Heavy Atoms 357.0

Ring Count 12.0

Amide Bonds 43.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0230488 VERIFIED: YES

Provenance & Taxonomy

OrganismGadus morhua [Animal]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)