Peptide Database

Peptide NameVv-AMP1

Function Ontology

—

Standard StatusStandard

Sequence Length27 amino acids

Chemical FormulaC116H187N43O42S4

DescriptionStandard

        RTCESQSHRFHGTCVRGSNCASVCQTE
    

Molecular Weight2984.25 Da

Isoelectric Point (pI)7.91

Net Charge (pH 7.0)0.91

Net Charge (pH 7.4) 0.54

Charge Density (pH 7.0) 0.0335

GRAVY Index-0.76

Hydrophobic Moment 0.51

Boman Index-0.26

Instability Index30.52

Aliphatic Index 25.19

Aromaticity 0.0370

Extinction Coeff. Reduced 0.00

Extinction Coeff. Oxidized 250.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1408.46

LogP -23.47

H-bond Donors 55.0

H-bond Acceptors 49.0

Rotatable Bonds 98.0

Heavy Atoms 205.0

Ring Count 3.0

Amide Bonds 29.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0350035 VERIFIED: YES

Provenance & Taxonomy

OrganismNicotiana sylvestris [Plant]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)