Peptide Database

Peptide NameSd3

Function Ontology

—

Standard StatusStandard

Sequence Length39 amino acids

Chemical FormulaC175H278N58O57S6

DescriptionStandard

        RHCLSQSHRFKGMCVSSNNCANVCKTESFPDGECKSHGL
    

Molecular Weight4298.82 Da

Isoelectric Point (pI)8.42

Net Charge (pH 7.0)1.98

Net Charge (pH 7.4) 1.54

Charge Density (pH 7.0) 0.0507

GRAVY Index-0.65

Hydrophobic Moment 0.43

Boman Index-0.17

Instability Index51.62

Aliphatic Index 37.44

Aromaticity 0.0513

Extinction Coeff. Reduced 0.00

Extinction Coeff. Oxidized 250.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1874.10

LogP -27.23

H-bond Donors 70.0

H-bond Acceptors 68.0

Rotatable Bonds 144.0

Heavy Atoms 296.0

Ring Count 6.0

Amide Bonds 42.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0310518 VERIFIED: YES

Provenance & Taxonomy

OrganismOryza sativa [Plant]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)