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MYP_063408
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Basic Information
YD1
Antimicrobial
Antimicrobial ▸ Antibacterial
Antimicrobial ▸ Antibacterial ▸ Anti-Gram-negative
Antimicrobial ▸ Antibacterial ▸ Anti-Gram-positive
Antimicrobial ▸ Antibacterial ▸ Anti-Mycobacterium
Standard
10 amino acids
C39H65N13O13
Standard
Sequence
APKGVQGPNG
Physicochemical Analysis
924.01 Da
8.80
0.79
0.61
0.0795
-0.93
0.31
0.03
4.74
39.00
0.0000
0.00
0.00
The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.
Residue Composition
Amino Acid Composition
Chemical Descriptors
419.84
-6.39
12.0
14.0
27.0
65.0
2.0
11.0
Structural Visualization
3D PDB MODEL
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2D CHEMICAL STRUCTURE
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Experimental Records
RECORD: Rec_0312067 VERIFIED: YES
Provenance & Taxonomy
Bacillus amyloliquefaciens [Bacterium]
Bacteriocin
Structure & Mods
linear peptide [Linear]
canonical L-amino-acid peptide [L]
Bio-Activity Profile
Antimicrobial
Enterococcus faecalis ATCC 29212
64 μg/mL
MIC
PaperGlycin-rich antimicrobial peptide YD1 from B. amyloliquefaciens, induced morphological alteration in and showed affinity for plasmid DNA of E. coli.
RECORD: Rec_0332079 VERIFIED: YES
Provenance & Taxonomy
Bacillus amyloliquefaciens CBSYD1 [Bacterium]
Structure & Mods
linear peptide [Linear]
canonical L-amino-acid peptide [L]
Bio-Activity Profile
Antimicrobial Antibacterial Anti-Gram-positive Anti-Gram-negative
Staphylococcus aureus methicillin-resistant Staphylococcus aureus B15
32 μg/mL
MIC
PMID28050849 Evidence URLhttps://pubmed.ncbi.nlm.nih.gov/28050849/
RECORD: Rec_0344323 VERIFIED: YES
Provenance & Taxonomy
Bacillus amyloliquefaciens CBSYD1 [Bacterium]
Structure & Mods
linear peptide [Linear]
canonical L-amino-acid peptide [L]
Bio-Activity Profile
Antimicrobial Antibacterial Anti-Gram-positive Anti-Gram-negative
Micrococcus luteus ATCC 9341
64 μg/mL
MIC
PMID28050849 Evidence URLhttps://pubmed.ncbi.nlm.nih.gov/28050849/
RECORD: Rec_0365023 VERIFIED: YES
Provenance & Taxonomy
Bacillus amyloliquefaciens [Bacterium]
Natural peptide
1390
Structure & Mods
linear peptide [Linear]
noncanonical stereochemical modification [Modified]
None
Amidation
Bio-Activity Profile
Antimicrobial Antimycobacterial Antibacterial
Mycobacterium smegmatis ATCC 9341
MIC
PMID28050849 Evidence URLhttps://pubmed.ncbi.nlm.nih.gov/28050849/
RECORD: Rec_0384774 VERIFIED: YES
Provenance & Taxonomy
Bacillus amyloliquefaciens [Bacterium]
Bacteriocin
Structure & Mods
topology not specified [Not included yet]
canonical L-amino-acid peptide [L]
Bio-Activity Profile
Antimicrobial Antibacterial
typhimurium KCTC 1925
32 μg/mL
MIC
PaperPubMed PMID: 28050849 PMID28050849 Evidence URLhttps://pubmed.ncbi.nlm.nih.gov/28050849/
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