Peptide Database

Peptide NameParigidin-br1

Function Ontology

—

Standard StatusStandard

Sequence Length33 amino acids

Chemical FormulaC148H229N37O47S6

DescriptionStandard

        GNGIPCAESCVWIPCTVTALVGCSCSEKVCYYN
    

Molecular Weight3471.01 Da

Isoelectric Point (pI)4.53

Net Charge (pH 7.0)-1.30

Net Charge (pH 7.4) -1.59

Charge Density (pH 7.0) -0.0393

GRAVY Index0.56

Hydrophobic Moment 0.31

Boman Index0.27

Instability Index28.73

Aliphatic Index 76.67

Aromaticity 0.0909

Extinction Coeff. Reduced 8480.00

Extinction Coeff. Oxidized 8855.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1321.14

LogP -14.83

H-bond Donors 51.0

H-bond Acceptors 52.0

Rotatable Bonds 104.0

Heavy Atoms 238.0

Ring Count 6.0

Amide Bonds 34.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0268224 VERIFIED: YES

Provenance & Taxonomy

OrganismViola tricolor [Plant]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)