Peptide Database

Peptide NamePeptide chain P in PDB 1JY3

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length46 amino acids

Chemical FormulaC220H348N60O74S4

DescriptionStandard

        VATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKDLRTLEGIL
    

Molecular Weight5145.73 Da

Isoelectric Point (pI)4.33

Net Charge (pH 7.0)-3.30

Net Charge (pH 7.4) -3.58

Charge Density (pH 7.0) -0.0717

GRAVY Index-0.14

Hydrophobic Moment 0.58

Boman Index-0.01

Instability Index13.62

Aliphatic Index 84.78

Aromaticity 0.0870

Extinction Coeff. Reduced 2980.00

Extinction Coeff. Oxidized 3230.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2191.28

LogP -24.76

H-bond Donors 80.0

H-bond Acceptors 75.0

Rotatable Bonds 168.0

Heavy Atoms 358.0

Ring Count 5.0

Amide Bonds 49.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0032699 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 1JY3 receptor chain S

MethodProtein-peptide complex structure