Peptide Database

Peptide NameJaponicin-1Npb (Frogs, amphibians, animals)

Function Ontology

Antimicrobial

Standard StatusStandard

Sequence Length71 amino acids

Chemical FormulaC354H563N97O108S7

DescriptionStandard

        MFTLKKSLFLVFFLGMVSLALCRHERHAHEESSNDPTEEENAAGNEESGEEGDMEKRFVLPLVMCKILRKC
    

Molecular Weight8130.30 Da

Isoelectric Point (pI)5.29

Net Charge (pH 7.0)-4.24

Net Charge (pH 7.4) -4.68

Charge Density (pH 7.0) -0.0597

GRAVY Index-0.30

Hydrophobic Moment 0.55

Boman Index-0.04

Instability Index55.98

Aliphatic Index 76.90

Aromaticity 0.0704

Extinction Coeff. Reduced 0.00

Extinction Coeff. Oxidized 125.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 3302.26

LogP -29.54

H-bond Donors 116.0

H-bond Acceptors 114.0

Rotatable Bonds 280.0

Heavy Atoms 566.0

Ring Count 10.0

Amide Bonds 73.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0300533 VERIFIED: YES

Provenance & Taxonomy

OrganismNanorana parkeri [Animal]

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

Antimicrobial