Peptide Database

Peptide NameJaponicin-1CDYa

Function Ontology

Antimicrobial

Antimicrobial ▸ Antibacterial ▸ Anti-Gram-negative

Antimicrobial ▸ Antibacterial ▸ Anti-Gram-positive

Toxicity / Safety ▸ Blood cell toxicity ▸ Hemolysis ▸ Hemolytic

Standard StatusStandard

Sequence Length61 amino acids

Chemical FormulaC327H523N83O96S4

DescriptionStandard

        MFTLKKSLLLLFFLGVINVSLCEEERDADEEERRDDPEERDVEVEKRFFPLALLCKVFKKC
    

Molecular Weight7281.41 Da

Isoelectric Point (pI)4.78

Net Charge (pH 7.0)-4.50

Net Charge (pH 7.4) -4.79

Charge Density (pH 7.0) -0.0738

GRAVY Index-0.24

Hydrophobic Moment 0.55

Boman Index-0.11

Instability Index50.66

Aliphatic Index 97.38

Aromaticity 0.0984

Extinction Coeff. Reduced 0.00

Extinction Coeff. Oxidized 125.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2920.64

LogP -18.69

H-bond Donors 103.0

H-bond Acceptors 96.0

Rotatable Bonds 253.0

Heavy Atoms 510.0

Ring Count 8.0

Amide Bonds 61.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0325449 VERIFIED: YES

Provenance & Taxonomy

OrganismRana dybowskii [Animal]

FamilyBrevinin

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

Antimicrobial Anti-Gram-negative Anti-Gram-positive Hemolytic

TargetEscherichia coli

RECORD: Rec_0346614 VERIFIED: YES