Peptide Database

Peptide NamePp-AMP1

Function Ontology

—

Standard StatusStandard

Sequence Length36 amino acids

Chemical FormulaC156H267N51O49S6

DescriptionStandard

        KSCCPSTNARNIYNACRLMGTSRPICASLSGCKIVN
    

Molecular Weight3833.49 Da

Isoelectric Point (pI)9.35

Net Charge (pH 7.0)4.71

Net Charge (pH 7.4) 4.43

Charge Density (pH 7.0) 0.1308

GRAVY Index-0.03

Hydrophobic Moment 0.70

Boman Index-0.05

Instability Index56.77

Aliphatic Index 70.56

Aromaticity 0.0278

Extinction Coeff. Reduced 1490.00

Extinction Coeff. Oxidized 1740.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1636.18

LogP -23.79

H-bond Donors 63.0

H-bond Acceptors 60.0

Rotatable Bonds 125.0

Heavy Atoms 262.0

Ring Count 3.0

Amide Bonds 39.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0032136 VERIFIED: YES

Provenance & Taxonomy

OrganismCapsella rubella [Plant]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)