Peptide Database

Peptide NamePeptide chain B in PDB 5UB5

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length40 amino acids

Chemical FormulaC179H275N49O66S7

DescriptionStandard

        DVNECVTNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT
    

Molecular Weight4393.84 Da

Isoelectric Point (pI)4.05

Net Charge (pH 7.0)-7.20

Net Charge (pH 7.4) -7.55

Charge Density (pH 7.0) -0.1800

GRAVY Index-0.22

Hydrophobic Moment 0.44

Boman Index0.06

Instability Index22.53

Aliphatic Index 60.75

Aromaticity 0.0500

Extinction Coeff. Reduced 1490.00

Extinction Coeff. Oxidized 1865.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1852.97

LogP -23.19

H-bond Donors 64.0

H-bond Acceptors 67.0

Rotatable Bonds 140.0

Heavy Atoms 301.0

Ring Count 5.0

Amide Bonds 46.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0308306 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 5UB5 receptor chain A

MethodProtein-peptide complex structure