Peptide Database

Peptide NamepdBD-2

Function Ontology

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Standard StatusStandard

Sequence Length41 amino acids

Chemical FormulaC211H313N69O59S7

DescriptionStandard

        DSEMQYWTCGYRGLCRRFCYAQEYTVGHHGCPRRYRCCATR
    

Molecular Weight4984.62 Da

Isoelectric Point (pI)8.90

Net Charge (pH 7.0)3.88

Net Charge (pH 7.4) 3.47

Charge Density (pH 7.0) 0.0946

GRAVY Index-0.92

Hydrophobic Moment 0.62

Boman Index-0.29

Instability Index29.65

Aliphatic Index 21.46

Aromaticity 0.1707

Extinction Coeff. Reduced 12950.00

Extinction Coeff. Oxidized 13325.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2105.13

LogP -22.75

H-bond Donors 85.0

H-bond Acceptors 72.0

Rotatable Bonds 156.0

Heavy Atoms 346.0

Ring Count 11.0

Amide Bonds 42.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0406140 VERIFIED: YES

Provenance & Taxonomy

OrganismDichotomyctere nigroviridis [Animal]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

-

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)