Peptide Database

Peptide NameCyclotide vinc-A

Function Ontology

Antimicrobial

Standard StatusStandard

Sequence Length29 amino acids

Chemical FormulaC122H192N34O41S6

DescriptionStandard

        GIPVCGETCTLGTCYTAGCSCSWPVCTRN
    

Molecular Weight2983.42 Da

Isoelectric Point (pI)5.96

Net Charge (pH 7.0)-0.30

Net Charge (pH 7.4) -0.59

Charge Density (pH 7.0) -0.0103

GRAVY Index0.34

Hydrophobic Moment 0.26

Boman Index0.19

Instability Index48.54

Aliphatic Index 50.34

Aromaticity 0.0690

Extinction Coeff. Reduced 6990.00

Extinction Coeff. Oxidized 7365.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1180.46

LogP -16.92

H-bond Donors 48.0

H-bond Acceptors 47.0

Rotatable Bonds 87.0

Heavy Atoms 203.0

Ring Count 5.0

Amide Bonds 29.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0291512 VERIFIED: NO

Provenance & Taxonomy

OrganismViola inconspicua [Plant]

FamilyCyclotide

Structure & Mods

Configbackbone-cyclized cyclotide scaffold [Cyclic]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

Antimicrobial