Peptide Database

Peptide NamePeptide chain F in PDB 3VUM

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length11 amino acids

Chemical FormulaC61H103N19O15

DescriptionStandard

        RPKRPTTLNLF
    

Molecular Weight1342.59 Da

Isoelectric Point (pI)12.00

Net Charge (pH 7.0)2.76

Net Charge (pH 7.4) 2.55

Charge Density (pH 7.0) 0.2508

GRAVY Index-0.96

Hydrophobic Moment 0.21

Boman Index-0.35

Instability Index73.75

Aliphatic Index 70.91

Aromaticity 0.0909

Extinction Coeff. Reduced 0.00

Extinction Coeff. Oxidized 0.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 570.11

LogP -5.11

H-bond Donors 20.0

H-bond Acceptors 18.0

Rotatable Bonds 41.0

Heavy Atoms 95.0

Ring Count 3.0

Amide Bonds 11.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0012027 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 3VUM receptor chain A

MethodProtein-peptide complex structure