Peptide Database

Peptide NameOncocin [P5D]

Function Ontology

Antimicrobial

Antimicrobial ▸ Antibacterial

Standard StatusStandard

Sequence Length19 amino acids

Chemical FormulaC108H174N36O27

DescriptionStandard

        VDKPDYLPRPRPPRRIYNR
    

Molecular Weight2408.76 Da

Isoelectric Point (pI)10.88

Net Charge (pH 7.0)3.73

Net Charge (pH 7.4) 3.52

Charge Density (pH 7.0) 0.1965

GRAVY Index-1.84

Hydrophobic Moment 0.56

Boman Index-0.64

Instability Index47.95

Aliphatic Index 56.32

Aromaticity 0.1053

Extinction Coeff. Reduced 2980.00

Extinction Coeff. Oxidized 2980.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 1036.84

LogP -8.43

H-bond Donors 36.0

H-bond Acceptors 31.0

Rotatable Bonds 71.0

Heavy Atoms 171.0

Ring Count 7.0

Amide Bonds 19.0

3D PDB MODEL

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2D CHEMICAL STRUCTURE

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RECORD: Rec_0243889 VERIFIED: YES

Provenance & Taxonomy

Organismsynthetic construct [Synthetic]

Tax ID32630

Structure & Mods

Configsynthetic linear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

C-TermAmidation

Bio-Activity Profile

Function

Antimicrobial Antibacterial

TargetEscherichia coli JW0013

Activity3.3 μg/mL

MethodMIC