Peptide Database

Peptide NameSd1

Function Ontology

Antimicrobial

Antimicrobial ▸ Antibacterial ▸ Anti-Gram-negative

Standard StatusStandard

Sequence Length41 amino acids

Chemical FormulaC186H297N63O61S6

DescriptionStandard

        RHCLSQSHRFKGMCVSSNNCANVCKTESFPDGECKSHGLER
    

Molecular Weight4584.12 Da

Isoelectric Point (pI)8.42

Net Charge (pH 7.0)1.98

Net Charge (pH 7.4) 1.54

Charge Density (pH 7.0) 0.0483

GRAVY Index-0.81

Hydrophobic Moment 0.43

Boman Index-0.24

Instability Index49.59

Aliphatic Index 35.61

Aromaticity 0.0488

Extinction Coeff. Reduced 0.00

Extinction Coeff. Oxidized 250.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2031.50

LogP -29.13

H-bond Donors 76.0

H-bond Acceptors 72.0

Rotatable Bonds 155.0

Heavy Atoms 316.0

Ring Count 6.0

Amide Bonds 44.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0401508 VERIFIED: YES

Provenance & Taxonomy

OrganismOryza sativa [Plant]

Structure & Mods

Configlinear peptide [Linear]

Chiralitycanonical L-amino-acid peptide [L]

Bio-Activity Profile

Function

Antimicrobial Anti-Gram-negative

TargetEscherichia coli TOP10

MethodMex pooled growth assay (OD_ID at 4.5 h; Wald adjusted p-value)