Peptide Database

Peptide NamePeptide chain I in PDB 2XND

Function Ontology

Binding / Molecular interaction ▸ Binding activity

Binding / Molecular interaction ▸ Protein-protein interaction

Standard StatusStandard

Sequence Length47 amino acids

Chemical FormulaC237H388N66O65S2

DescriptionStandard

        VAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVKV
    

Molecular Weight5266.15 Da

Isoelectric Point (pI)10.10

Net Charge (pH 7.0)6.72

Net Charge (pH 7.4) 6.48

Charge Density (pH 7.0) 0.1430

GRAVY Index-0.07

Hydrophobic Moment 0.68

Boman Index-0.01

Instability Index5.43

Aliphatic Index 89.36

Aromaticity 0.1064

Extinction Coeff. Reduced 9970.00

Extinction Coeff. Oxidized 9970.00

The radar chart summarizes major physicochemical dimensions for quick comparison, while exact numerical values remain listed on the left.

Amino Acid Composition

TPSA 2165.70

LogP -20.08

H-bond Donors 80.0

H-bond Acceptors 74.0

Rotatable Bonds 179.0

Heavy Atoms 370.0

Ring Count 6.0

Amide Bonds 49.0

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber in the current view mode. Use the buttons to zoom.

2D CHEMICAL STRUCTURE

Drag to move

Drag to move. Use the buttons to zoom.

RECORD: Rec_0423608 VERIFIED: YES

Provenance & Taxonomy

Organismnot reported [other]

Familyprotein-binding peptide

Structure & Mods

Configtopology not specified [Not included yet]

Chiralitystereochemistry not specified [Other]

Bio-Activity Profile

Function

Protein-binding Peptide-protein interaction Structural binding

TargetPDB 2XND receptor chain H

MethodProtein-peptide complex structure